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Biomedical and Life Sciences

Peer Reviewed Publications

  • Soni AS, Jenkins JW and Sundaram S. Determination of critical network interactions: An augmented Boolean pseudo-dynamics approach. Accepted for publication in IET Sys. Biol., 2007.
  • Soni AS and Parker RS. Tailored sequence design for third-order Volterra model identification.” Ind. Eng. Chem. Res., 46, 818-829, 2007.
  • Soni AS and Parker RS. Efficient input signal design for third-order Volterra model identification”, Proceedings of the Sixteenth IFAC World Congress, Prague, 2005.
  • Jenkins J, Sengupta D and Sundaram S. Characterization of a solid state DNA nanopore sequencer using multi-scale (nano-to-device) modeling. ICCS 2005, LNCS, 3516, 309-316, 2005.
  • Soni AS and Parker RS. Closed-loop control of fed-batch bioreactors: A shrinking horizon approach”, Ind. Eng. Chem. Res., 43, 3381-3393, 2004.
  • Soni AS and Parker RS. Control relevant identification for third-order Volterra systems: A polymerization case study. Proceedings of the 2004 American Control Conference, 5, 4249-4254, 2004.
  • Jenkins J, Sundaram S, Hickman J and Lenghaus K. Non-linear extraction of kinetic constants from experimental data using multiphysics simulations”, Anal. Biochem., 331, 207-215, 2004.
  • Yue M, Lin H, Dedrick D, Satyanarayana S, Majumdar A, Bedekar A and Jenkins J. A 2D microcantilever array for multiplexed biomolecular analysis. JMEMS, 13, 290-300, 2004.
  • Soni AS and Parker RS. Fed-batch bioreactor control using a multi-scale model. Proceedings of the 2003 American Control Conference, Denver, 3, 2371-2376, 2003.
  • Al-Fandi M, Malshe A, Sundaram S, Jenkins J, Tung S and Kim J. Simulation and design of an E. coli-based rotary micropump for use in microfluidic systems. International Mechanical Engineering Congress and Exposition paper #IMECE2003-41450.
  • Efficient identification for the third-order Volterra model: A tailored sequence approach. Soni AS and Parker RS, submitted to Comp. Chem. Eng.
  • A Matlab tool for analyzing multi-drug chemotherapy and the evaluation of tamoxifen and cis-retinoic acid or fenretinide acting against ER + MCF-7 xenografts. Balius T, Eisman J, Egorin M, Soni AS and Parker RS, manuscript in preparation.

Presentations

  • Wilburn J, Ciobanu M, Jenkins J and Cliffel D. Metabolic Profiling of Organophosphate Exposure to PC12 Cells by Multianalyte Microphysiometry. Electrochemical Society Annual Meeting, Washington DC, 2007.
  • Soni AS, Jenkins JW and Sundaram SS. An Augmented Boolean Pseudo-dynamics Approach to Determine Critical Interactions in a Regulatory Network. American Institute of Chemical Engineers Annual Meeting, Salt Lake City, 2007.
  • Soni AS, Jenkins JW and Sundaram SS. Identification of Critical Interactions in Antimalarial Neurotoxicity using Boolean Pseudo-dynamics. Biomedical Engineering Society Annual Meeting, Los Angeles, 2007.
  • Jenkins JW, Hood JE, Soni AS, Aschner M, Jiang CT and Sundaram SS. Biological Pathway-Centric Approach to Integrative Analysis of Array Data as Applied to Mefloquine Neurotoxicity. The Association of Biomolecular Resource Facilities, Tampa, 2007.
  • Jenkins JW, Hood JE, Soni AS, Cliffel DW, Wilburn J and Sundaram SS. Development of Neural Protectants Against Organophosphorus Compound (OPC) Neurotoxicity. Biomedical Engineering Society Annual Meeting, Chicago, 2006.
  • Jenkins JW, Hood J, Wikswo JP and Sundaram S. Development of a Quantitative Dynamic Model of T-Cell Signaling & Metabolism. Biomedical Engineering Society Annual Fall Meeting, Baltimore, 2005.
  • Jenkins J, Sengupta D and Sundaram S. Computational Proof-Of-Concept of Next Generation Nucleotide Tunneling Current-Based Nanopore Sequencing Devices. International Conference on Computational Nanotechnology, Boston, 2006.
  • Jenkins J, Sengupta D and Sundaram S. Multiscale (Nano-to-Device) Design of Nanobiosystems. International Conference on Computational Science, Simulation of Multiphysics/Multiscale Systems, Boston, 2005.
  • Jenkins J, Sengupta D and Sundaram S. Characterization of a Solid State DNA Nanopore Sequencing Device Using Multiscale (Nano-to-Device) Modeling. International Conference on Computational Science, Nano-Science and Technology, Atlanta, 2005.
  • Bedekar AS, Jenkins JW and Sundaram S. Computational Analysis of Protein Binding in ElectroWetting On Dielectric (EWOD) Systems. Proc. Modeling & Simulation in Microsystems Conference, Anaheim, 2005.
  • Jenkins JW. Multiscale (Nano-to-Device) Design of Integrated Nanobiosystems. University of Arkansas Department of Physics Colloquia, 2005.
  • Jenkins J, Hagan M, Chakraborty A and Sundaram S. Multiscale (Nano-to-Micro) Design of Integrated Nanobio Systems. Proc. Nanotech Conference, Boston, 2004.
  • Jenkins J and Sundaram S. Spatial and Transport-resolved Mechanism/Pathway Inference from Fluidic Biosensors. Beyond Genome, San Francisco, 2004.
 
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